False Negative

[ Quality Control/Quality Assurance Main | False Positives ]

Problem

Control Measures

Insufficient sensitivity of primer system

During design and validation:

  • Computer aided primer design
  • Test sensitivity of a new primer system in the single copy range on reference DNA of defined concentration

Inhibition of PCR reaction

During validation:

  • Test primer system on sample DNA solutions known to contain inhibitory compounds

During routine analysis:

  • Test each PCR reaction for inhibition by an individual positive control (a spiked counterpart)
  • Duplicate analysis of each sample

DNA extraction failed

  • Choose appropriate extraction protocol for sample type
  • Run controls to monitor the efficiency of each series of extractions

 

 

 

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